NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209058_1194278

Scaffold Ga0209058_1194278


Overview

Basic Information
Taxon OID3300026536 Open in IMG/M
Scaffold IDGa0209058_1194278 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010118Metagenome / Metatranscriptome308Y
F029514Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0209058_11942781F029514N/AVKSGGPEVDPSVERVVRVLEQLQRRDPSRYVRLRSAAALRQIGPREVQ
Ga0209058_11942782F010118N/AMNIRFHQRLFSISRPVALFRASVLLISMARLAQPVFAADAKEPALIEHTQPSEPGSQHASAVRNGVLSTRDGLTLRLTTDLGSVNIVQLEVGAAPVVRYTVHIETDAHGTAAQQLLDSYSLKAKSLTSGVEITGMLPPQAARSADAQFWVQFEVAVPRGYNVEVNTEAGDITTADIGGTASLHTLGGNIKTGRIGASELHGLTWGRSVAKLETEGGHIKVLDVA
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