NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228620_1040389

Scaffold Ga0228620_1040389


Overview

Basic Information
Taxon OID3300026483 Open in IMG/M
Scaffold IDGa0228620_1040389 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 23D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002915Metagenome / Metatranscriptome521Y
F073140Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0228620_10403892F002915AGGMKKLFLLILIIPILGQSKEVFTNDQGLKIEYVKPSIPCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDQNMIKQLEKKAKEAG
Ga0228620_10403893F073140N/ATQKQEFWFTSYNTREECIADMSWQLEGEDDPNKKRISILHTKPYGCHFMSNNKWLSMYYYLVYRDEGMGCLWESSNPNVRIKYSVTLKTFENVPEQGRCILGD

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