NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255166_1006153

Scaffold Ga0255166_1006153


Overview

Basic Information
Taxon OID3300026473 Open in IMG/M
Scaffold IDGa0255166_1006153 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2794
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005586Metagenome / Metatranscriptome395Y
F078427Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0255166_10061531F005586GGAGMTVNYKLDAMLELRKYLWAKLKAAGIFDESIYWSDNVGENIVPILPVQQYPEMNQFLSGKKHIIYDKIGVSYDTLWLICNEQILFTVYSTDVSEINEIRNFMIDEFRRMDDAAKDMNRHPGFNS
Ga0255166_10061532F078427GGAGLEYNVPLLQASSGLRNLMTASKGGVMKESLVAQISAYVYYNVQVISKLTSNAAFKNKFKEVIFNQIEKEFGEYVDSQARVKPKSLHHVYEWNQTGDKSARLFKLNKLNTEDLGFSMTYEFLPSKTFAKSEGNRRHVFVNKASVMEAGMPLKIAPRHSKRLVFETNGYKVFMPIGASVTVRRPGGTGVKNSFMMTYSRFFRSNLVNLAIKRSGFQQLFNRSMTKALNLPSEIKTVKYSFNPNTISIQADAALTSAFGASL
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