NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247557_1012753

Scaffold Ga0247557_1012753


Overview

Basic Information
Taxon OID3300026403 Open in IMG/M
Scaffold IDGa0247557_1012753 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 2R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F007772Metagenome / Metatranscriptome345Y
F023446Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0247557_10127531F007772N/AITMSTQSTDLLKISYNLFDKHYTKLTDEQRSKVWDIYYDFY
Ga0247557_10127533F023446N/AMSKNVQFIDDLCELMGGDRFFLCDQYCQDDLFEMQDRIAKHIAISANDGLGLAKVMVSKFPSTFTTE
Ga0247557_10127535F000352N/AMRNIKLTDGDCTFVHYVLRMYASQTDNLDQDDKEEIY

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