NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257162_1001081

Scaffold Ga0257162_1001081


Overview

Basic Information
Taxon OID3300026340 Open in IMG/M
Scaffold IDGa0257162_1001081 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2912
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030261Metagenome / Metatranscriptome186Y
F080381Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0257162_10010812F080381GGAGGMNSKAWRVVAVSLVTGLMIGMPGAGQAADGEDDDPALAALFENAPARPDQLFRVEWVASPGRSGRSRLEGSVHNDFGRTALNVQLRVIELDAAGETLSTVIGPTLERVPGQGRVRFDVQVPDHRRSYRVAVASFSFDFADPAAR
Ga0257162_10010817F030261N/ALHLLRPGAVAMTRVARLVPGVLLIAILVGVAGCASIPGAAGAPIADAGVIAGKWAGTVTPGDEPFYLTINPGGTLTAAWGPNMAWGTVTVRNGQATFEMQPGPYEGSIRLYENGGTRQIVLDDIWASFNARAVPQ
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