NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209131_1037849

Scaffold Ga0209131_1037849


Overview

Basic Information
Taxon OID3300026320 Open in IMG/M
Scaffold IDGa0209131_1037849 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2789
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014421Metagenome / Metatranscriptome263Y
F022716Metagenome / Metatranscriptome213Y
F056499Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209131_10378493F056499GGAGGMKMNSQSRSFVKQVQVDLLALCDADLFHTVRQWVEGSDPSRVFLDVPEDTRFALGYTGILQEAHPLSDRHSDMPGAESETSAQWHAPSPYHLRTLLTAMDVSMFAQHVITFAFKSLHTTYPEWCDGVTFNAHLANYLRRMRVETANHDQRAKQKLISKSF
Ga0209131_10378494F022716AGGAMKYYVTYRITHPGHTPTTATGTVEARTQHDLELGLARGVGKWKEQGYVIEIVKVACFEHDHITHE
Ga0209131_10378495F014421AGAAGGMLKQSSETYEPHPSGRMSDTTAYSAHIQEAMRYDKLGSLDYSMVLTILHAVAQGWTEEQWKQEQHRTVSMLSQQPTDKASSYADAANRYEQTIAYFKDLVLWPW
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