NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209131_1021925

Scaffold Ga0209131_1021925


Overview

Basic Information
Taxon OID3300026320 Open in IMG/M
Scaffold IDGa0209131_1021925 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3824
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001175Metagenome / Metatranscriptome756Y
F001699Metagenome / Metatranscriptome649Y
F053947Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209131_10219251F053947AGGMDLVEQIVANLEVEPGAAEKGIGAILMAMRMVVDKPTFEKVRAAVPNLESYMGRALMSGARTGEMIGFAGPAALMVALAAAGFKKEDVPRLGRIVLEHIRPTVGNDPIEKFLTG
Ga0209131_10219253F001699GAGMKLQLRHLFIALLPLVFGLAASWGFAFSQDRCGRLVGPIFAPKCHWIQLEYQIGFQMAGTLFGCLIAAVLGAWLERRSRRAERAQLNQGVST
Ga0209131_10219257F001175N/ACSGHQFDRLRRYSLPYAGRWVVARGDSLTFPDAPAMSDRFRLGDITLDSATVPLGRECAFRGRIVFRAPRAETLAVNWFGQPEQAIVSGWPADLGPFAGLSLSWSGRDSMSGAILLDSKLGVHARPGMTARFVAGRAPRLSSAP
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