NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209155_1002588

Scaffold Ga0209155_1002588


Overview

Basic Information
Taxon OID3300026316 Open in IMG/M
Scaffold IDGa0209155_1002588 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8326
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048882Metagenome / Metatranscriptome147N
F071064Metagenome / Metatranscriptome122Y
F072159Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209155_100258811F071064GGAMKVLGFGLALMLMATGASGQDQPPAPEAFRVSWQQETDPVSPRIEGRVHNDSRFRVTDVRLQVEGLDAGSRPVGRTFAWAFGDIAPGDDTSFVIEAVPGAVTYQITVVSYDVVSGPISLEAR
Ga0209155_10025885F072159GAGGMKSLLTVLIALGLAAWATPASAYVAQITTSIPAASAGDDTQLEDALNAAVHDVLQHAIAFAPTLVAVRDARVVGDRVYILLLVADGEGEETIKDLVNADQTDL
Ga0209155_10025886F048882N/AMSRRTFGKALAAAVVAAACMLALRVDVGSAQVGVVIAGRVLWVAGQTMVVAPYASGTAPVRIDLSRASQDEYMRLTTGDSVTVMGIIPAEGDRVMATSIRDD
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