NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207674_10003183

Scaffold Ga0207674_10003183


Overview

Basic Information
Taxon OID3300026116 Open in IMG/M
Scaffold IDGa0207674_10003183 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20215
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F060131Metagenome133Y
F065509Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0207674_1000318311F060131GAGMKRKSGCGPGLIGLGLLIAFVVGEHYLAISIDKRRFPWGYVDSGRPPLVGTWVGPFTTRSGKRLAMLIDMQLVPLGRDRKGTPIIRTQRHSWLEARVLVCDGPGRVRHLEASGEPNDNGASRFHLATSPTDSGPPPEGLAPSHLYGRWDGADSLALEASLYIRRGKSAISKSDDPDTGLNKTPLTLRRGTDAGFTALCDRLH
Ga0207674_1000318316F065509GGAGGVFATRRPTILTEARTDPYAFFRRIFERVRRRHRPVRAPLAEFDGTCVGRRLGLLHYVPAEAQLDDARRLAQAELQLRESVSRLASARGDNTGLALEARRTREQVSELLEEPAGWLPRALTRWPSSNANVLRSLEAVTLAMARLRDDCDRLAQDATVLNETRQALSQLERGYARDLAREWQRAVVDRELMTRPEHVHSSIAVRRLGEEVAFLAGHLEARYQALLMQQDIFARELHDLGADAIGPPDDLGLEEQVERSAELIRQASLLQMKAAKQRIDEASATHNAGQHRASRAAELSPDEPAAQEAGSR
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