Scaffold Ga0207641_10000331

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207641_10000331

Scaffold Ga0207641_10000331

Overview

Basic Information
Taxon OID	3300026088 Open in IMG/M
Scaffold ID	Ga0207641_10000331 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57928
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (11.11%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012355	Metagenome	281	Y
F027225	Metagenome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207641_1000033123	F012355	GAG	MNKLFILLVCALCPQLFFAQTKDLPGCKTIKKEIAEVNNSFDNIVEKFKSKEDKVSLVKTYFSDFSICSEKGKIKDYGRNIEFIFNFTDAYYKGSRLEFRDFYKKIFKKLKDEFGTTHVYKVSKEQSGKSSYFYEKDKEMTSSKRNIKLLLSYKDTVDSSTAYSVSLVFEYYPKR
Ga0207641_1000033157	F027225	N/A	MCFFFVFTSCKQSQEKKELWAPVIDFFSPDMSFYPDIKKFPFPDSLRFVSLESFFSNKDKKPILTDSTIIFFDNYWENGQKSCCKKDTLQVFTDTIKGKKYLFVIGEYLSLLQSDNNIDTKLRRRNPPGSIPLWGIQLNVPYPIEKFKDEYEKLGAKYVEIDPRNDEVSRQKWKENDSILVETIQFNNSTDRIITAVQKDMTEKEMDSIIEQLKNNFPTITYEEALQKDDDGKPIKVIRMNFHGMSISFKQNGKNVYSFSITDYYETLNLILNNAGIGYVFRDDVKFY

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