Basic Information | |
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Taxon OID | 3300026087 Open in IMG/M |
Scaffold ID | Ga0208113_1027096 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1691 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | Location on Map | |||
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001048 | Metagenome / Metatranscriptome | 793 | Y |
F007771 | Metagenome / Metatranscriptome | 345 | Y |
F010791 | Metagenome / Metatranscriptome | 299 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208113_10270961 | F010791 | GAG | MSFEFRAGRKRVVKSVETVEEANKLMRRMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFETMSIYVNGKSVRRIWSRGF |
Ga0208113_10270962 | F007771 | GAGG | METIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIIIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSEDDYYRSPHEVEAYGLEKWLQLGYTATWNKIEEKNG |
Ga0208113_10270965 | F001048 | N/A | MKIVSTKQFWWRFNHLKRNGGEITVTDKTPEMDVKEFNRIELLVNKRVRWEIGSEGMAIWNACGVKDIPTLAKAYRIK |
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