NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208878_1004904

Scaffold Ga0208878_1004904


Overview

Basic Information
Taxon OID3300026083 Open in IMG/M
Scaffold IDGa0208878_1004904 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4223
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002093Metagenome / Metatranscriptome594Y
F051469Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0208878_10049046F051469AGGAGMEKFTVEINVGDIVEIGREHLANQEVKNIEIDKWGHPVLVLESGRKRGVFNMRFKKLIPSDVVRKQEPADILMTKEQWAEAERKIAESKANQ
Ga0208878_10049049F002093AGGAGGMAYDGTIPAGGPGNFQTPNLAHEGEGCRVDFITVDYISDVSGEVTHSTASANTAGLKLSMEAIQNQGVNILGHGALGNSDTEQTYMVRADALDTISGTTTVAAIQAAIRALNALTPDKVTANISSATAGDRDMSDTQVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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