| Basic Information | |
|---|---|
| Taxon OID | 3300026074 Open in IMG/M |
| Scaffold ID | Ga0208747_1005090 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3724 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (57.14%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | -0.015038 | Long. (o) | -22.962334 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005399 | Metagenome / Metatranscriptome | 402 | Y |
| F006146 | Metagenome / Metatranscriptome | 380 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208747_10050906 | F006146 | GGA | VVIQKSKDLLIDCSMIITTATIIIVQALVVSWIVFTTPEPCPRKYRVIQEQGGILASPTDIHRYCKLDYGGKFVLKDEYKE |
| Ga0208747_10050908 | F005399 | AGGA | MAIELDVFQEIKLDENSGEIVMRPMAEMLDAPLDFLDEEDEPEWASLMEVLTETMIDPYTVAASTEVPNEKDYHMMVAASEDLFSVANDFARKVEGLHTIDPKEYQERIKQFEQGTFWPTEEQKMSMEDHGPGPDEEK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |