NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207667_10022127

Scaffold Ga0207667_10022127


Overview

Basic Information
Taxon OID3300025949 Open in IMG/M
Scaffold IDGa0207667_10022127 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7032
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Mycoplasmatales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044766Metagenome154Y
F085500Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0207667_100221273F085500N/AMSEEKKTHSLSLETNGYSFQQVEISQHYKKKHPDITDELILELLKLFVDKRDFQPDKLTTDYFVLEKILNLGKKYKLVXQIENGKTFIVVNCYRIRKKW
Ga0207667_100221274F044766N/AMNLAVQVSVNQTGHLPNQKTKYSKHQEGYFISYYQKNKQKYLLAQQKYRAKLKANKPPKLTSLFQQTKQNQLLKLLVNPRSFVPVPLKLKHPIIKNXNVSDYXYSKKIDLNNLERGCVRIYKDNXNNCAIIXLDIDCKKWTKLAKLLRCGYVKSPKGHIRIPVPVRNLGNLKTGTLYYQNQKIGDAKLSGEVMLPSNAYYDKSGKFLGYYEYKAXGTFFPYQNKIWKNSEEFFAKLTEISGIEYRSIREHFKLKTEQKIFTESDYNTLAETLYIGIKEPPXQKVIITLRIVSKIGIN
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