NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207706_10241464

Scaffold Ga0207706_10241464


Overview

Basic Information
Taxon OID3300025933 Open in IMG/M
Scaffold IDGa0207706_10241464 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1579
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → environmental samples → uncultured Acidobacteriota bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041838Metagenome159Y
F077466Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0207706_102414642F041838GGCGGMPRLQPNILLLTGVAVAAVVCWYLWRPKEAPQLLAAPLSVSYDRETTRLTAVVNLLNSSDHPIVASITNNVFVDSQKQPLTDRQEPWRIELGSKQSNPVTFTLQGESAADAWNGARLLEVTIDASYDSEPQRAKLNCHFSFMGRFYPQLKQLGVVSNLTSPRECRGD
Ga0207706_102414643F077466N/AIARPLDSTPAPTAVSTMFNGIPVRSTVRQRLVERASCVRDDAAIECATFESRSNIEQESLAVLQNYLSPGASGSGVRITGSEKVDRVTLEIDTMLPHEAILTRTLQSTTQLSGRVVSTENVQRRTVRFTYVKEQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.