NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207690_10128291

Scaffold Ga0207690_10128291


Overview

Basic Information
Taxon OID3300025932 Open in IMG/M
Scaffold IDGa0207690_10128291 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1852
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035526Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0207690_101282912F035526GAGMADCLRRELLYSEKRPRDTVFRTIEQILAEQDPTGEHRILSRLTRDAIARAARQASNAAVRWDVAGKTVVKAMVGAGVLLTPKGEPVPAGIAAQATPVATVRDQFEDITEAFLLETLIRRLEDVTIHDHRALAHALFRQFDRSVPLDDLEDRVVVLLARLADRVELHGERYVARDVPVGRPPRRAAGRAAGPC
Ga0207690_101282913F035526N/AMLIRGGVNPVEDRAEARGFARSREMAACLRKELLYSEKRSRDALFQIIEAILTEQEQTGEHRIVSQLTREAEARAQAMPAAADSVRWDVASKTVIKAMIGAGVLLRPDGRPVPAGITALASPVARLCDGFRDRTEAFLLEVLIERLDDVTVRDHRALAHVLFRQFDPEVPIGDLEDRVVILLA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.