NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207700_10199297

Scaffold Ga0207700_10199297


Overview

Basic Information
Taxon OID3300025928 Open in IMG/M
Scaffold IDGa0207700_10199297 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1686
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067170Metagenome / Metatranscriptome126Y
F075370Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0207700_101992971F067170AGGAMFDIITIFLIGVLLLFAIYTAIQFRGKHPKRTIEDVTPFLRPAEHDELELLLDPAQETNFRIRMSPQEFTVWQRRRIHLLREYLLRMSHNALVLIEWGNMEAMAEGNDAETVRQRQ
Ga0207700_101992972F075370N/AVKNPELVLALVGTGLQAVLCLLLLIRRTYREFPVFFASATVSVIGTIVGLAVSSNNRVYSNVFWANEAFGVILAFFALNEALRSVFRNFLGMRWFRWLFPGIGIAMASAAVLRIILLPRPAFSLFTTTIIGLEIAVGFLQFGIFSLFIVLVRLFHLRWGQHAAGIVFGYGVSAAGSLVAYLLRSEFGTKFDPVVRIAPPIAYIIGVAIWLATFLKAESGRPEAAWAAKLTPEQVILELKRHTTTVKGILGR
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