NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207687_10000022

Scaffold Ga0207687_10000022


Overview

Basic Information
Taxon OID3300025927 Open in IMG/M
Scaffold IDGa0207687_10000022 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)223060
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (60.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001750Metagenome / Metatranscriptome642Y
F061939Metagenome / Metatranscriptome131Y
F101406Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0207687_10000022133F101406AGGMLPVSRGFIAALGGIGMTLLAWFGSWAWPGWPASIAIDLLGKWGDFAELPRLQKSAIVVLLIMINVGTWAAAFRAAMLIVRKSSSAAPS
Ga0207687_10000022155F061939GGAGMIRTRGILVAALFVLFGTGCFEVEQSIELKRDLSGTANFKLGVDMEPMVMIMAKVQKEMSGDKSPLTKAEIAAAKADFKKNEKKSTTTKEDPRKQAESGLPPGVKLLDVAVDEKEFGVVTNMKFAFDKLSSLVGVKLGGKKEGDAPADPTKKSIIDTPFQGLEISETAKTISIHTKPQNPAEKVKSEASEQGPKMDPDTEKMMNDAFKNLRVAWKITAPFEVASSNATRREGNTLIWEYDWDKLQKLAASKKALDDLEVRVTYKK
Ga0207687_1000002259F001750AGCAGMPKVTAEIPGELSRQIDRMIRDGWFPDQDAIIREALSHFVDAKSFLGDSPRMLHRFAADALNDSKPEVALKFVNRGLSLLPKQDATDFHLYQNLVELRVQILLVLDRTAEALASLEEARETLPNNPTIAKWITRLKRVKSEG
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