| Basic Information | |
|---|---|
| Taxon OID | 3300025927 Open in IMG/M |
| Scaffold ID | Ga0207687_10000014 Open in IMG/M |
| Source Dataset Name | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 297704 |
| Total Scaffold Genes | 272 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 143 (52.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Michigan, USA | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007491 | Metagenome / Metatranscriptome | 350 | Y |
| F008503 | Metagenome | 332 | Y |
| F008640 | Metagenome | 330 | Y |
| F016413 | Metagenome / Metatranscriptome | 247 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207687_10000014242 | F008503 | N/A | VKKVLIVVAAIALIAWVISWFRVPEAVATSAARPWPGGMGRLDSATGRVLPQKANDASAKLMALVNALPKNQLAGDFAAREIARGELAIGTPPALPDVTAIRELLLRQPIVWERREGIGGGDDANAERAAQMMAARALAASALVKARANDPEAWEELHAVWNLARSLDGHPQMSAQTAALTMARMINAAGWKMPLPPPPWFAELQRRDNVRPLLEAFQHQTASYANDGSQIFPTKMLADSIDRDRGIAEELVKETRCDVNPRENETGTDLRSVWRRAFRYRAEREAAANALRVRESKPIETRSQCSDGSWSFDGTTLRFSHDIAPGTQDRPMPLALHVRN |
| Ga0207687_10000014250 | F008640 | AGG | MDETTRIRIRYIFLTPRSAVALMTAADHLGMSLKELKREIEDGAIVAVSTRMGVKVSKEELMAAAMRVWEQAFIEEALGDDAASVLPEAIRLVELRARVPRYQREMLRELARMEGTSVDHVLTRELEDVASAHAEELAGVAGFAMAMQWPAASHG |
| Ga0207687_1000001430 | F016413 | GGA | MKFSSMNGSVAGQDPATETIFLSQRHASFLAKMSDEINPAMPKAFGWPHAIRTILDRIEESKIDLTVASSEHEIAQLAAGELRAKGRRRTASRG |
| Ga0207687_1000001432 | F007491 | N/A | MTTRLSTAAATVFLCGALLTHCTGGQESKAAEEQAPKKNGIPQATTAPPATPQIDPKATLKSISPAIPIYAGARYRDDLTRRDSVMIRNQYGPNAEVYTLATDDSFPQVYHYYTTYLAQFRAFPAQSPYPAPQTWRTLEVQLNQAMQDPFIPGDMLKPGDKQITLQVAETEAEPKTVIRYVITPQPIATSELKAPKPAPAPNAFDRE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |