NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207659_11694456

Scaffold Ga0207659_11694456


Overview

Basic Information
Taxon OID3300025926 Open in IMG/M
Scaffold IDGa0207659_11694456 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024580Metagenome / Metatranscriptome205Y
F053862Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0207659_116944561F053862AGGMRRPMPNRRVETSAPVDRDVTAADVQLTRAFIAVAIGLLLAIWVLRPICASPNVRTALPELRALSGVPTLVI
Ga0207659_116944562F024580AGGAGMKTLFNRNTGIAAFAAVVIVGLTGLTLERGHGGALPRGVIEVGNPTTLAVGDLIVAQLPTVEVIGTREVQVADAKAHAEPQG

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