NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207659_10449534

Scaffold Ga0207659_10449534


Overview

Basic Information
Taxon OID3300025926 Open in IMG/M
Scaffold IDGa0207659_10449534 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1085
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006963Metagenome / Metatranscriptome361Y
F027343Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0207659_104495341F006963AGGAMTRLLFATLLCALGITQASAQTVVSQGLLELDDNERNASFTLMLRDIDRRCDQVIRTLFTGTVLGVDEWEALCKDRNAYSISVLVEPDETTITSLTCRELLATSKRLLHRA
Ga0207659_104495342F027343GAGMRCLFCNAEMVLMEAVQADPTTIPNFEHRTFLCPACHGVERRLAYAGARAPSATSHSPSPAANLHIGSGMPQSAWSRVVEKVLHKQIELNGRTAAKRRPDIPSTVEKVGSGRRNAEERPRPSTKKSIDLVSELNRIWDDPRPAADKRLEPPATPKAE
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