NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207650_10934138

Scaffold Ga0207650_10934138


Overview

Basic Information
Taxon OID3300025925 Open in IMG/M
Scaffold IDGa0207650_10934138 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)737
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002872Metagenome / Metatranscriptome524Y
F005951Metagenome / Metatranscriptome385Y

Sequences

Protein IDFamilyRBSSequence
Ga0207650_109341381F002872GGAGMAYRRMALFAFLAASALTPILVAQDEQQTPAPQAQPANAQPFDPHDISGIWRNPGGFDPIIGMNRPPMTEWGKEQWSKTRASARNTSLAFGFYADQKDWNDPLFLCDPSGYPR
Ga0207650_109341382F005951N/AVQVYFTLKNDKGEEQTWGIETVSPGNALGNGWTKSTFKAGDELLVSFVPAKGDRFFGNCPQIVFVADGKRLGGRGTCGGGAVEAVADMSKLPVKPGYTKVEVKMPKDDGKRPASLQEK
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