NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207707_10185957

Scaffold Ga0207707_10185957


Overview

Basic Information
Taxon OID3300025912 Open in IMG/M
Scaffold IDGa0207707_10185957 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005548Metagenome / Metatranscriptome397Y
F007088Metagenome / Metatranscriptome358Y
F012379Metagenome / Metatranscriptome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0207707_101859572F012379N/AMVTAAARPHVFWIGDDGQPVRGWPVGRALLEALGTMNEDVQEALADERARLCAHGYPPDLPLPALWWTATTAAAGKPLLAAVGT
Ga0207707_101859574F005548N/AVFRWLRSLFGRGRRDEAAPIREAEAYARSYGERSGEIVSVARQEPKPIPRRTGDMTGELLRRAFELKLDERGKART
Ga0207707_101859575F007088GGAGMQLSLRDPSYTDRLAAFLTSVGRRAVVSAPDRVDVDDPAEDSQRLELELYLRVWSVLYPDADVELAVS
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