NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10069819

Scaffold Ga0207684_10069819


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10069819 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2985
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010820Metagenome298Y
F018243Metagenome236Y
F083135Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_100698193F083135GAGGMLAMAPPETPRTHRVLKGLTVLAIVAMAFLAGMLVERLRLDAQREDMLRRYDRVLRQYREDQMISEKAIRR
Ga0207684_100698194F018243GGAGGMRHWARTVLALACAGCATMTSEQKMVHELFVEAAGKCESRYHTIHVDQVSLDGSLQIHADAESRGQYPGFVACYHEALKAVAESRRKAGLPVPDGLTQEHDVEL
Ga0207684_100698195F010820N/AMKAMFLALCFGAAVASPAGAGDPVVVLQETRTPIISKQHRSFQHVVLLKNTSPYPVRGLRVTVEFYDFFGKLLLVRSGTPVPSSLGPGDTATLSLPTPALEAARKTRYRFAYGGGPPRGNRPSPR
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