NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10060676

Scaffold Ga0207684_10060676


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10060676 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3212
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000586Metagenome / Metatranscriptome1007Y
F019886Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_100606765F000586N/AMWGSVPETNSNHQQFQTPCFMAPDIIQADMNHADPNTMRARARQATEILKTQLLRTGAIESLVALYFDDHIEQVEFQDPSVLEHFDVRTARSFDYLRTLVRIKNPQAAMITLDVQMGPFESDERDVLADTTAIFLMLDSPLLTIQVLLPYTRCGGRTAVSNVHYTEMPSDEGGTPCPLFKIFSDVPVAVC
Ga0207684_100606766F019886N/AMPCVSFLLTRTVPAEYKHITVTLPLPQWQDLLAASGEEFRKAVLSGIRKQETSVELEAIKQALNLEKAVEGADLVINRFKLQVV
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