NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10007237

Scaffold Ga0207684_10007237


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10007237 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10027
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001603Metagenome / Metatranscriptome664Y
F003165Metagenome / Metatranscriptome504Y
F007543Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_1000723713F001603AGGAGMKLQETRKHLLLLFIALVFALTIYPTKAQAQIIGQLDVNVPFQFHAGNTKFPSGKYFIHLLDDSDLTVMEISSADGSKSALFEVRTTQASSTPAKSELIFNKYGNRYFLSKVFEEGSSSGSEVFESRYEKRVVQAAAEAQEHVPARKRGDGVGEDTEVSVNVASQL
Ga0207684_100072375F007543AGGGGGMDSNYVFLCGVMWCRFGQEDAGKELLRAADSGDPDMGALAWAMLTKGARRLRELEKRAQPFSRTILGGELCG
Ga0207684_100072376F003165AGGAGMAKVIEFYIPPRFRKPLKWAPQLQSGKLIEFCSQTRKSA
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