NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207645_10827341

Scaffold Ga0207645_10827341


Overview

Basic Information
Taxon OID3300025907 Open in IMG/M
Scaffold IDGa0207645_10827341 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)629
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009497Metagenome / Metatranscriptome317Y
F023906Metagenome / Metatranscriptome208N

Sequences

Protein IDFamilyRBSSequence
Ga0207645_108273411F009497N/AFNDAMKGVRDIELLTMIWIYSALRATSTKNRLALLVAGLRWIGILVFALLSGYFVTQDAYLESTISILTVLAWIAATTEALDLVLERYS
Ga0207645_108273412F023906AGGMKCLACSAEMRLTEVCPDRTTVCGIERHTFRCSACAHTAKRLIFNRSRVPITNLPVVIPPTAPLIDPHNGRPAAPSAWAKSIEK

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