NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10071877

Scaffold Ga0208916_10071877


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10071877 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1440
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F061661Metagenome131Y
F071151Metagenome122Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208916_100718771F061661AGGAGMRYREHYTIQPVTRKWADIALALTIGVGLAFFFFMGV
Ga0208916_100718772F103126GGAGMSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWVAAERLTSARHKQDYDNLAQHCKQLELEIMELKR
Ga0208916_100718774F006696GGAGMKFIKFLKDYYRDLTPAEVIARELAQAHLDRLEAEGAVEYAQAVLDMNMTRIERLNTRLGEYK
Ga0208916_100718775F071151AGGAGMNCCNANGQCDQGKDCPIRQQRIKEINDAYVNGHKDAQLDDPIDDLADTFKALLTMLTLVLGVWIVCLIIWGK
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