NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10002798

Scaffold Ga0208916_10002798


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10002798 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7090
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F002135Metagenome / Metatranscriptome590Y
F007522Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_1000279811F007522N/AMTLKEAGLLWVASMVGIIYAYGLIQNAKQTHYWRGRKDGWDMHRRMIENKTNADNN
Ga0208916_1000279815F000141AGGAMHPQFKCNGCKAKTEFLWLEQLDTPEGFKAYQCMSCGCVGVKNIAEALHIPDSSIDRCTKCGGWQFLGSGCHTCALIGA
Ga0208916_100027988F002135N/AMANTRKRKKINRRVVRKSPDPLSKLEVFYIAKHEMYKAARKAGFSEPIALALMDSPGSMPDWVVGEDGIIPSIPTPEEDED
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