NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10000156

Scaffold Ga0208916_10000156


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10000156 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33194
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (72.34%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F011374Metagenome / Metatranscriptome291Y
F023064Metagenome211Y
F035226Metagenome172Y
F086832Metagenome110N
F100720Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_1000015617F011374GAGGVAVYQDLKKTGSDLSKITGEVGGALSGFFKGQAELEAGHEKTEVQREENKRKGIKDDLASQAIDNVMYLRQTKQFYADLERMVRWEMGQPDLWREFVDEYQRLLDQKAEDNARELHKKRVAEWRRQKLKNKILDRALETGLVLFVAAYLIILMWMISLHHKGRLGMFLS
Ga0208916_1000015623F002764GGGGGMTEEDEAFEELSRKQGDWGLQGSRKHQIMRFAENAERNRVIEEIAQHLETKFTGPFGRSTVESFSMYIRGLKK
Ga0208916_1000015628F023064GGAGMNADQIIESIKEVADKQYFGEPPANRLAYHVGLLESHLRTHINLLETSREYIKELETKLIAKDSE
Ga0208916_1000015629F100720AGGAGGMKYPRYPRTMNEAFPKTMEYGAAIEIHVAQHSIGDKVIRALALVALIVLALDCFIWRP
Ga0208916_1000015633F035226GGAMNFVKPDTKKDPIDEVQRLMCSVPGCPKRWSVHMEGQRPMCSEHQWSGSKPVKKDISALLPNSKPVKHWMDDGEVF
Ga0208916_1000015635F086832AGGMDKPSAVSLSTERLRLLETMRHTEAKEWLQRFNQKIKDVGKEKATAWWQATIADIARRRGEVAADDLRKRMNAIRREG
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