NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10118208

Scaffold Ga0209631_10118208


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10118208 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1489
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018478Metagenome235Y
F025412Metagenome202Y
F099320Metagenome103N
F100003Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209631_101182082F018478GAGMVKEFEEMDWSKEYTYKEQKIYISYETKKYILCSFYENGKGTFKLDKTEFHG
Ga0209631_101182083F100003N/AMKIKRKHYKALQYASLIQRWKYLPRNFIFEVVNNSEVNEQMLNRNRIEQNGKRI
Ga0209631_101182085F099320AGGMSMEEENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIETEGEVYFINLYED
Ga0209631_101182086F025412GAGMNYRELKWGALKSYATKLGINTKGMTKVVLLEWLDAMPDVAHGIEELTPFTGIKQEHPLFDEIKDYLPYLKAYKKLNAISRDPNINKEIATLFLKYIEEDKNIRLNLGCGICKQRYYERMIAGYNRLVDEYGGGERI
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