NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209631_10014659

Scaffold Ga0209631_10014659


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10014659 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6722
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F005843Metagenome / Metatranscriptome388Y
F010322Metagenome / Metatranscriptome305N
F020173Metagenome225N

Sequences

Protein IDFamilyRBSSequence
Ga0209631_1001465910F005590GGAGGMTEKLTPLERWKELAIIENARMKRRLIGRDDMHAYAHKPWPLEKLRKEIKRCLSRHGELSVGDLCSMIDQDAVHIDVGLRTMRERRTIVKTSFIEGQQLYRLRTQEEFAF
Ga0209631_1001465913F010322GGAMAWTCSVDDDFTLTPEQHAEMSAIASNTMSEANALMRDMMAITERTELPDLAKVYALGAALQSVIGHMRENDCDVQDAIAMTMGIIFETYSTPDKEDMH
Ga0209631_100146593F020173GGAMICTTCDGTGFIELPRFVNTPDSDAWTTVRCPECQDEDDFDWRNEKEEE
Ga0209631_100146596F005843AGGTGGMNLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPWPDVRPQPRPTQESNNG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.