NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209540_10658471

Scaffold Ga0209540_10658471


Overview

Basic Information
Taxon OID3300025888 Open in IMG/M
Scaffold IDGa0209540_10658471 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)518
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow, Alaska, USA
CoordinatesLat. (o)71.270939Long. (o)-156.810374Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001490Metagenome / Metatranscriptome685Y
F005331Metagenome / Metatranscriptome404Y

Sequences

Protein IDFamilyRBSSequence
Ga0209540_106584711F001490N/AIYVYTYTSAMKHSDCAQLLHRIAQIQHMEPGKLCVMRQGPNGPYHNLQWREDGKAISRYVPSEQVEAVAQNTANYEQFQALVAQYAQLIIEQTRAGRTAGFKKKTLPPRSSWPKTRKSSS
Ga0209540_106584712F005331AGCAGMARFQANQPDGLAVQQMEVLVRAAVFKSANALVGWLLQKAADQIDAAYQPKP

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