NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10009940

Scaffold Ga0209534_10009940


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10009940 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7785
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010473Metagenome / Metatranscriptome303Y
F019630Metagenome / Metatranscriptome228N
F030048Metagenome / Metatranscriptome186N
F043091Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0209534_1000994010F010473N/AMNLIRYEFKAGFFKGFLFGIRHYPFDDKDIYEEDIVLYIGIFQIILTLIYEK
Ga0209534_1000994011F019630AGGAGMPKIKKKIVLKNCNYKHQQYCFKKGFIIYPVVSGKMFKVYCNRIKGNYYMKGKEFNKQESFQSIWDLYTKIYNYEFNKVRV
Ga0209534_1000994012F030048AGAAGMLQGELCKNQEKVAYKSCVDSYFTNEDRQDIMEYWLQLFEQKRFCEAKGVEKALELIDIYEELNAKD
Ga0209534_100099405F043091N/AMELTEKKLEKISGAIISSFINLHLLEDADKIGLFRQRVRNNIRRTISDLKDIEINYYNKIEEVDEKELGDKLIANKLIFLDWVLNKFDFNDFCKIQEVCLAYEADKERVTQVTDEVLINNGAK
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Institute for Fundamental Biomedical Research
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