NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10061889

Scaffold Ga0209757_10061889


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10061889 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100618892F015741GGAGGMQLKLKLGSVLVCLMFSTGCSFPIVELIPPVFNFALGFYDHNDYYSKECLWYDEIKLNDDTKKWLLESNPPEIVSEDLSKVSRNNDIYREVCKEHKSMMDKMKAKADRVLDKTLMATEEEDGQTNNEEKESDSN
Ga0209757_100618893F002078AGGAGMDIAAMFEGQGWFAIAGQIVLIFTAVTGALPDRFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQSEVEEEIDAAKAKVRKRTGMPDVLDGM
Ga0209757_100618894F022754N/AMNELIITIMLVIPSPYKMVDWTINEVPTQIQVIHKSGLEVSYTATPVSCKFQPRHKREMVFRSPQNRCYSVFDLSSPRFVRHPSFWYKIQLPKNPKDMDYLMKKEKLIGD
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