Scaffold Ga0209757_10001251

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209757_10001251

Scaffold Ga0209757_10001251

Overview

Basic Information
Taxon OID	3300025873 Open in IMG/M
Scaffold ID	Ga0209757_10001251 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6143
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (53.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056918	Metagenome	137	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209757_1000125110	F056918	N/A	MKHLKVGDIVIAVFLGTPNECEVIQVTDKKNKLYKLRMKSGTILPGVTWLKLLDAKQKKNKPWHILKYVKHDKSKVIEVDKNTLSDLDQAVCQQRKFIRGEIKE
Ga0209757_100012512	F074050	N/A	MKRSDIKKIIKQEIVNIQNEAVTRTVTRGTVTDNTRLATILSSLGKRANNAFQKRKVVSQVIMALASALEITPNEVLRAYMDYKRDAKGQASTKVKKDQ
Ga0209757_100012513	F077815	GGA	MQGKDLKNRIKQIIREEVSSLVNEESYKFGHLADPKEMDPNDPMVKVTGFASLNRSSIRNQIVDRLSGALATAKDAAAGGTESYASYKQLQDLISDSGILYKLIGAELDTANQLEAKRLKGGRRSIPIPKQ

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