NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209311_1181213

Scaffold Ga0209311_1181213


Overview

Basic Information
Taxon OID3300025871 Open in IMG/M
Scaffold IDGa0209311_1181213 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC045_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)856
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)40.12Long. (o)-87.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080087Metagenome / Metatranscriptome115N
F097409Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209311_11812131F097409GGAGGMNLRELQANIANIIGKRAEAMDRLNRLTMIDDRFNPENIVTITAYKQAIEELSKELNRLETERAELIEVESAARKEYVAALNAYDEIYGRFPNAEKEAGEIRKRYAKITDAAEKARSIVLEKMNALT
Ga0209311_11812132F080087N/ALERKGIKMETEEKAKAWKISKAEWYVKIPARYREYTCAHRVVAIYRRYGQITDYQYRVSKKELLEIERIVETRIEQTNPKGGQR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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