NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209666_1048546

Scaffold Ga0209666_1048546


Overview

Basic Information
Taxon OID3300025870 Open in IMG/M
Scaffold IDGa0209666_1048546 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2298
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002374Metagenome / Metatranscriptome566Y
F007750Metagenome345Y
F058285Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209666_10485463F002374N/AMNQVLLYASIILASLSFFLCLYACVRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPSDKLGG
Ga0209666_10485464F007750AGGAGGMAFLGDFGKFFGLGSSEEVLGQAGQAVGSLFGPAGSITGRELGRATGRATSNLAGDDNISPLSTADQAREQSAVPVSVIGNRPQETSTMTGTTGMVTQAGFGALAPFVTGVGRLLGSKTGQIATGVGTAVGLGTSQFMGMNGREKPVLTQSRRNKAKVRQLVNFMGIEGTANFLSQSIGQNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN
Ga0209666_10485465F058285AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRN
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