NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209666_1018999

Scaffold Ga0209666_1018999


Overview

Basic Information
Taxon OID3300025870 Open in IMG/M
Scaffold IDGa0209666_1018999 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4143
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F007417Metagenome351Y
F008281Metagenome336Y
F008595Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0209666_101899911F001942N/AMPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSMSDTYRNYTCDILAFVFFDDEQKRIMFKPNTSSQNYYTFDKKAITESMELDSLQDTLATLSSVPVLNPII
Ga0209666_101899915F008595AGGAGMSKEENKMENQEPVVITYNGTEYRASDMNEEQMALAAKLNIAGKKLARLQEFYDDYVITNEYKNLCIESFDRAINTEDVAEVVEEE
Ga0209666_10189997F008281N/AMNLMCNTEHGAIQWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIRQEIKDEIWEDMQSDFEYQKSIYKIHKLNKKNFK
Ga0209666_10189999F007417GGAGMRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIAEGHKVKLTKEKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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