NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209717_1012995

Scaffold Ga0209717_1012995


Overview

Basic Information
Taxon OID3300025855 Open in IMG/M
Scaffold IDGa0209717_1012995 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC048_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5349
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.12Long. (o)-87.64Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051104Metagenome / Metatranscriptome144Y
F078674Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209717_101299512F078674AGGAGMEALKKAIENRRAPLEVEGKAGGRIISLRVSEKMEQILEEQAQEWGMSISDTLRSILNFYFLPPLLLEAWEKKVEGLVELDTKARGVNREDLNAPTQAQRIEPVLVDYEEACEYAQFIGELWDKNLKYWEVLREEGVAMHEIAVKEIEETRKAMDKGAKKLFKAEVEQ
Ga0209717_10129958F051104AGGAGLFELRIAEAIEEEAVLSQNLIEEGFNHAFKAGELLQEVKSMLSSEEELEQWLQENCSKVEKGVASSCMRLFNGETVKVQATKKEEMNHKRERG
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