NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1133689

Scaffold Ga0209603_1133689


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1133689 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1037
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018181Metagenome / Metatranscriptome236N
F024650Metagenome / Metatranscriptome205Y
F037238Metagenome / Metatranscriptome168N

Sequences

Protein IDFamilyRBSSequence
Ga0209603_11336891F024650N/AEVTFALSENGNNVYYSGAWIARVIASKYSRQVTTQLSGALSADYSDLAKQYQALADNLEYQGKTAGASVGVLAGGITKSTVEAVRRNTNRIEGSFRRDRFKNPPSYQTPEYE
Ga0209603_11336892F037238AGGAGMSFRSFDLLNLVRDFGETLTLRKVTTAGTYNPATGSIDSSATTDYSVTGYLYNYNAGVIGGNDEVVRGSRKCIISALDLAAVPDFDDLIIGSGDAVKIISVMSLFSAGTAIGYICDVEE
Ga0209603_11336893F018181AGGAGMKASLKVNSSFYKKMEILDEYVEEYVSDQLLEIAQTAVNLSPVDTGAYVTSFSYSVGSGRPRGKSSDNKPKGQNPQAMRQEGLSNLMSDINKVDLKNTTRITLRNASP
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