NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1026441

Scaffold Ga0209603_1026441


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1026441 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3498
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031863Metagenome / Metatranscriptome181Y
F057337Metagenome / Metatranscriptome136N
F071664Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209603_10264416F057337N/AMTYSELSTMTIEDLRTLNSMVVETIKSKKSLLSLEKKDSLYVGAIVSVDHPKMAGHELKVTKINRTKAVCELINGMGSYNVPLNMINIING
Ga0209603_10264418F031863N/AMIPVGNDLYVIKRKFKIEHWEKIVKHFGANEVCEAYHCETILRGRDGYFYLCDKVDDAQI
Ga0209603_10264419F071664N/AMIKKIKSKLLTYLFTDWVKSETDLETIKLTSQMLKNREIQITGIKPVLGFRSHLSEVQRDTPTIQ
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