NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1011997

Scaffold Ga0209603_1011997


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1011997 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6047
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002164Metagenome / Metatranscriptome588Y
F016831Metagenome / Metatranscriptome244Y
F053219Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0209603_101199713F002164GGAMKELLNRRRCMFHKRYVTKRMAELQSEIFHDAMETGLVNLEKRKQLLKYKEHLKHLNGGK
Ga0209603_10119973F053219N/AMNYAIFDMDDTLCTLEHRRNKAMESGKINFNILFDPKLVEYDLPEDHVVDLAQTLKMFNTKIIVMTARPYYMEEATKKWLKYHHIPFNKLITKEKNKVFQKSSLWKESKLQQLLEDINIEQIVLSIDDNKDNQRMFESYGIPVFNPLLQ
Ga0209603_10119977F016831N/AMTITEEKMIKIAKKSLGLTITDSFNDSCDLYCYNESTVDGYDVWVLTHSMSNININENVYYYESDLASAIMEEIQYNGGSETLLHMDEYLWDDLYMDDQMLEHFGEIIDDIIEDNDEEGYGLTPAEIQELKEEYGLDAEEIEETVS
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