NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1025365

Scaffold Ga0209193_1025365


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1025365 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1831
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013089Metagenome274N
F020174Metagenome225Y
F029927Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0209193_10253651F020174N/ARTYEPMSEIKEDVLKYWEWAQEEFKGEDIDRLRFEVDSAIINLNRYINAEFKRKAMGKARMRTK
Ga0209193_10253654F029927N/AMQPVNTKSLFHALCQTLEKLDREEINVTQAAAFSKVVSQCTQLLNYELKRAALMTNEEFRKEHRNLESKNFDSLPQ
Ga0209193_10253657F013089N/AMGQSKIKTIQPNGTYDSQNGLMYKFEVQLESGESGEVSAKSENRWSVGDEVEFEVTPSKWGDRMRLTKPGFGQGGQKNSPDIQKRIDASWAIGHAISQESDPEKILEAAE
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