| Basic Information | |
|---|---|
| Taxon OID | 3300025785 Open in IMG/M |
| Scaffold ID | Ga0208498_1003900 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3826 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010669 | Metagenome / Metatranscriptome | 300 | Y |
| F012769 | Metagenome / Metatranscriptome | 277 | N |
| F015058 | Metagenome / Metatranscriptome | 257 | N |
| F028152 | Metagenome / Metatranscriptome | 192 | N |
| F054590 | Metagenome / Metatranscriptome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208498_10039001 | F015058 | N/A | LLGLKVKTTMDDSWIYTLNSDIMRKDRERLKGQGIVISNLISEGQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPADAVKTLTYNDHESLKQKLGTIAVARASILKRKGLMQFHSLSESGNNPVDLYETEKTIVLMKLEARLLQLEH |
| Ga0208498_10039003 | F010669 | N/A | MELELTRMEQSEDDLTDPSDSEDSNMGISETRWPSDPSEVKSRLHAYIAHEQEILAELLSELESEVQTSSENITVERIKRCFRCIDDIIEYATQFLKQARLIEMRDFTGFYYEIENDAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVEETLEEYGARRTHTLREIEKLFP |
| Ga0208498_10039004 | F012769 | AGAAG | MKFQDPKFKVRELVKDKFDPILKEEYQEEIARKLFNASIEVIRQSVNRITEQYYLPYSLEEKEDVVKEAMVQVSEWKNRILIRRQEAKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH |
| Ga0208498_10039006 | F028152 | N/A | MDDIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNEDPYVIRACTNSLIVINEIERMQSETESVCDYLFNHYFTSEYAKEKRALLVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYRLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKEKTNFEITEVRKTSPYEYKDPREVNFRIPKIKNETKVVTRVRNPTYLDFLYRP |
| Ga0208498_10039007 | F054590 | N/A | KMIKNIAELRKNVGFTKLHRLANYKQRRQVADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWTI |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |