NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1000922

Scaffold Ga0208784_1000922


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1000922 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12891
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (97.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000852Metagenome / Metatranscriptome860Y
F002387Metagenome / Metatranscriptome565Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_100092214F002387AGGAMSSFLENINQMVIDAAVTDISDHLFDEWMNANLDEGTYFSDRRFAEMSGDKFLYDEFNKHYGLTEKDDDYLC
Ga0208784_100092215F000450GGCGGMGDRANFVFVQDSGETIVLYGHWAGYQMLQNLAEAVFKARPRWGDDSYATRIAISNMIGDGWSMETGWGIQVNSISDNEHKIPVINWKDRTFSLHEEDHFSNVGNKVRGMKNEAIFTMDLSAFVEKYADVIVPV
Ga0208784_10009226F000852AGGAMATKREYLKSKGITVGARGRFSGAAKVALQEAEKNGVKFEAEKPSK
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