NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209201_1050560

Scaffold Ga0209201_1050560


Overview

Basic Information
Taxon OID3300025708 Open in IMG/M
Scaffold IDGa0209201_1050560 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1750
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F034940Metagenome / Metatranscriptome173Y
F042353Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0209201_10505601F005744AGGMDEVFEIIKAGPGDTPPEQALYRIQQTYPDGSGGRLNIDWDGLLRVHELIHDRIALEGRVCETCDTKGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEI
Ga0209201_10505603F034940GAGGMGNDCWYYRAQYAGMTKVCMRQSIVECGRIRRFGLCPKPPDSEAWRRCGFAIGQVETAQAVRR
Ga0209201_10505606F042353GAGGMETRTPPTTLTGDACRRLERIIRDDLEHATVSSAMVLVEEGGRIVINELVLRFDDGRMVTLMPLGVPAETAVDLRLDIYDDRLAGGHGWREATVAEDYAEDLADLTRVWHPEPDMLEEAR

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