NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209201_1022260

Scaffold Ga0209201_1022260


Overview

Basic Information
Taxon OID3300025708 Open in IMG/M
Scaffold IDGa0209201_1022260 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC055_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3221
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales → unclassified Ignavibacteriales → Ignavibacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)41.53Long. (o)-90.43Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071725Metagenome122N
F072892Metagenome121N
F076577Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209201_10222606F072892AGGAGGMDINLLKTIVTRLFGLYSQFKSIVSDLETNNTLDNREWAQELLNHLSAELYYEANCLTDVICPPQEEEGDEKLFKIDGIINAERNPMSEDEFCELFLKWAEENKLQFGGGLGTYREEEENELLAEK
Ga0209201_10222607F076577AGGAGGMNFWPKSKVIALMEIAFHFGAISYAPSNGKKRREMWKEFKENCIDKRLKYINPDRRCGHPVNLDTLDYCWGYAHKIDKGEEIGMEELCEGCEFFKKEVNNENPTQ
Ga0209201_10222608F071725AGGAGGMKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLFATDEEIKAIRERWQKKEINEVGLFHELEKLSKVESLPE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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