NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209602_1225966

Scaffold Ga0209602_1225966


Overview

Basic Information
Taxon OID3300025704 Open in IMG/M
Scaffold IDGa0209602_1225966 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012192Metagenome282Y
F069628Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209602_12259661F069628GAGMKKLFQDAFFKECVIKLGSIYILLVILSFIFLEYRSSQGMTWANGFVFATHDKIAFAIFSLILITFSYGFYSWIKAIFSFVFLVQLSIRIKAIRVVYLLTAPIIARLIVSEIFAIVLI
Ga0209602_12259662F012192N/AMKKLFPLIGFTIIFIFVVLYFLDGLEYSEAEKEWCKEHRPLLPIEICAKEFGY

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