NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209602_1113736

Scaffold Ga0209602_1113736


Overview

Basic Information
Taxon OID3300025704 Open in IMG/M
Scaffold IDGa0209602_1113736 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)930
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003514Metagenome / Metatranscriptome482Y
F051178Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0209602_11137361F003514N/AYNKLREQELILKAAKSGGAIESEILHGSLFVTFKSGSTMGYMLSKNLKYVLEKLLDNTTVKVYNTTNNEYAYDFI
Ga0209602_11137364F051178GAGGMKKGKCTVCKKVFTVKKGESLIGKLGIIPVDLCKTHLKKVLSYDEMN

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